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Genomics

Basic Genomic Analyses

Differential gene expression analysis (all data assayed on Affy U133 Plus 2.0 arrays)

      Contrast                              Epithelial brushing                             Biopsy homogenates                             Alveolar macrophages
Healthy vs Steroid Naive Asthma

27 healthy controls vs
41 steroid-naive asthmatics
w/ 31 paired post-steroid


Click to download: DE table for top 1K genes

(same as GSE4302 dataset)
15 healthy controls vs
32 steroid-naive asthmatics
w/ 31paired post-steroid

Click to download: DE table for top 1K genes

(similar to GSE23611 dataset)

15 healthy vs
17 steroid-naive asthmatics



Click to download: DE table for top 1K genes

(similar to GSE2125 dataset)
Healthy vs Smoker
Click here to download the plots for: 15 Health vs 15 Smoke


microRNA differential expression analysis (ADMIRE) (data assayed on custom Agilent arrays)

Click here to download the plots: Top 217 DE miRNAs